Q Feng#, Z Lin#, D Zhao#, M Li#, S Yang, AP Xiang, C Ye*, C Yao*, Functional inhibition of core spliceosomal machinery activates intronic premature cleavage and polyadenylation of pre-mRNAs, Cell Reports, 2025, 44(3): 115376.
Q Feng#, D Zhao#, Z Lin#, M Li, AP Xiang, C Ye*, C Yao*, U4 snRNP inhibits premature cleavage and polyadenylation of pre-mRNAs, Proceedings of the National Academy of Sciences, 2024, 121(27), e2406710121.
H Qiao#, X Zhou#, Y Yi#, L Wei#, X Xu#, P Jin#, W Su, Y Weng, D Yu, S He, M Fu, C Hou, X Pan, W Wang, Y Zhang, R Ming, C Ye*, QQ Li*, Y Shen*, Molecular mechanism of vivipary as revealed by the genomes of viviparous mangroves and non-viviparous relatives, Current Biology, 2024, 34(16), 3707-3721.e7.
Q Feng#, Z Lin#, Y Deng, Y Ran, R Yu, AP Xiang, C Ye*, C Yao*, The U1 antisense morpholino oligonucleotide (AMO) disrupts U1 snRNP structure to promote intronic PCPA modification of pre-mRNAs, Journal of Biological Chemistry, 2023, 299 (7), 104854.
C Ye*, D Zhao, W Ye, X Wu, G Ji, QQ Li, J Lin*, QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering, Briefings is Bioinformatics, 2021, 22(6), 1-14.
C Ye*, J Lin, QQ Li*, Discovery of alternative polyadenylation dynamics from single cell types, Computational and Structural Biotechnology Journal, 2020, 18, 1012-1019.
J Lin#, F Hung#, C Ye, L Hong, Y Shih, K Wu*, QQ Li*, HDA6-dependent histone deacetylation regulates mRNA polyadenylation in Arabidopsis, Genome Research, 2020, 30(10), 1407-1417.
C Ye#*, Q Zhou#, X Wu, C Yu, G Ji, DR Saban, QQ Li, scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data, Bioinformatics, 2020, 36(4), 1262-1264.
C Ye#, Q Zhou#, X Wu, G Ji, QQ Li*, Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice, Ecotoxicology and Environmental Safety, 2019, 183, 109485.
C Ye#*, Q Zhou#, Y Hong, QQ Li*, Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution, RNA Biology, 2019, 16(6), 785-797.
C Ye, Y Long, G Ji, QQ Li*, X Wu*, APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data, Bioinformatics, 2018, 34(11), 1841-1849.
L Hong, C Ye, J Lin, H Fu, X Wu, QQ Li*, Alternative polyadenylation is involved in auxin‐based plant growth and development, Plant Journal, 2018, 93(2), 246-258.
C Ye, G Ji*, C Liang*, detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes, Scientific Reports, 2016, 6, 19688.
C Ye, G Ji*, L Li, C Liang*, detectIR: A novel program for detecting perfect and imperfect inverted repeats using complex numbers and vector calculation, PloS ONE, 2014, 9(11), e113349.
H Li#, C Ye#, G Ji*, X Wu, Z Xiang, Y Li, Y Cao, X Liu, DC Douek, DA Price*, J Han*, Recombinatorial biases and convergent recombination determine interindividual TCRβ sharing in murine thymocytes, Journal of Immunology, 2012, 189(5), 2404-2413.
H Li, C Ye, G Ji, J Han*, Determinants of public T cell responses, Cell Research, 2012, 22(1), 33-42.
1. 数理统计
2. 生物信息学
3. 专业外语
4. 环境与生态组学
1. Mathematical Statistics
2. Bioinformatics
3. English Seminar
4. Omics for Ecology and Environmental Sciences
1. 科技部重点研发计划项目，2023.12-2027.12，大型海藻重要经济性状遗传解析与复合性状良种培育，课题骨干；
2. 福建省自然科学基金面上项目，2020.11-2023.11，植物单细胞APA图谱及其非生物胁迫响应机制，主持；
3. 国家自然科学基金青年项目，2019.01-2021.12，基于单细胞转录组数据的APA位点建模与动态调控研究，主持；
4. 国家自然科学基金面上项目，2019.01-2022.12，集成单细胞转录组数据的选择性多聚腺苷化网络建模研究，参与；
5. 中央高校基本科研项目，2020.01-2022.12，植物细胞响应环境胁迫的分子机制，主持。
1. National Key R&D Program of the Ministry of Science and Technology, 2023.12-2027.12, Genetic Analysis of Important Economic Traits in Large Seaweeds and Breeding of Superior Varieties with Hybrid Traits, Core Member;
2. Natural Science Foundation of Fujian Province of China, 2020.11-2023.11, Alternative polyadenylation landscapes of plants and its response mechanisms to abiotic stresses at single cell resolution, Principal Investigator;
3. National Natural Science Foundation of China, 2019.01-2021.12, Modeling the alternative polyadenylation sites and dynamics based on single cell RNA-seq data, Principal Investigator;
4. National Natural Science Foundation of China, 2019.01-2022.12, Network modeling of alternative polyadenylation by integrating single-cell transcriptome data, Major Participant;
5. Fundamental Research Funds for the Central Universities in China, 2020.01-2022.12, The molecular mechanisms of plant cells in response to environmental stress, Principal Investigator.
